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| Name | PanGP |
|---|---|
| Type | Genome Assembly and Annotation |
| Developers | Yongbing Zhao, Xinmiao Jia, Junhui Yang, Yunchao Ling, Zhang Zhang, Jun Yu, Jiayan Wu and Jingfa Xiao |
| Description | We developed a tool, named PanGP, to complete pan-genome profile analysis for large-scale strains efficiently. PanGP has integrated two sampling algorithms, totally random (TR) and distance guide (DG). The DG algorithm drew sample strain combinations on the basis of genome diversity of bacterial population. The performance of these two algorithms have been evaluated on four bacteria populations with strain numbers varying from 30 to 200, and the DG algorithm exhibited overwhelming advantage on accuracy and stability than the TR algorithm. |
| Downlaod | https://ngdc.cncb.ac.cn/biocode/tools/BT000007 |
| Article | https://academic.oup.com/bioinformatics/article/30/9/1297/237096?login=true |
| Cite Count | 132 |
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