CNCB - Tool Info

Home/ Computational Analysis Tools/ CIRI

Name	CIRI
Type	Genome Assembly and Annotation
Version	v3.0.1
Developers	Zheng xin, Zhang jinyang, Zhou zihan, Zhao fangqing, Gao yuan
Description	CIRI is a multithreading tool for circRNA back-splicing junction (BSJ) detection and quantification. This latest version, CIRI3, has the same input requirement as its previous versions, including FASTA formatted reference sequences and the SAM or BAM alignment generated by BWA-MEM, for de novo detection of circRNAs based on BSJs. We encourage users to provide an optional GTF input to CIRI3, for an extra annotation-dependent detection according to known linear RNA exon boundaries, as well as for detailed annotation of all circRNA loci. CIRI3 is adapted for processing large-scale transcriptome data, which shows more efficient memory and disk usage.
Downlaod	https://github.com/gyjames/CIRI3
Article	https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0571-3
Cite Count	863

1 Beichen West Road, Chaoyang District Beijing 100101, China | 86-10-84097216