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| Name | DEMIC |
|---|---|
| Type | Genome Assembly and Annotation |
| Version | v1.0.2 |
| Developers | Yuan Gao, Hongzhe Li |
| Description | DEMIC is a multi-sample algorithm based on contigs and coverage values. It can be used to infer the relative distances of contigs from the replication origin and to compare bacterial growth rates between samples. Preparation for using DEMIC include 1) co-assembly of metagenomic reads in different samples by assembly algorithms such as MegaHit and Spades; 2) mapping metagenomic reads to contigs generated by BowTie2, sorted by samtools; 3) clustering contigs into groups by MaxBin and MetaBAT. |
| Downlaod | https://sourceforge.net/projects/demic/ |
| Article | https://www.nature.com/articles/s41592-018-0182-0 |
| Cite Count | 39 |
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